Reproduce “ProtoMIL: Multiple Instance Learning with Prototypical Parts for Whole-Slide Image Classification” on OpenResearch

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About this paper

Dawid Rymarczyk, Adam Pardyl, Jarosław Kraus, Aneta Kaczyńska, Marek Skomorowski, Bartosz Zieliński

ProtoMIL introduces a Multiple Instance Learning framework that provides fine-grained, case-based explanations for Whole-Slide Image classification while achieving competitive performance, including an AUC of 0.935 on the Camelyon16 dataset.

Key insights

  • Combining attention-based MIL with a prototype layer effectively generates fine-grained, case-based explanations by identifying crucial patches and comparing them to visually interpretable prototypes.
  • Leveraging attention weights within regularization losses successfully guides the learning of discriminative prototypes, particularly for sparse positive instances, without compromising overall performance.
  • The approach provides both local (explaining a single WSI prediction) and global (showing all learned prototypes) interpretability, thereby bridging the gap between AI predictions and clinical understanding.

Summary by alphaXiv.

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