Reproduce “Benchmarking External Generalization of SPD Matrix Learning for Resting-State fMRI Connectome Prediction” on OpenResearch

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About this paper

Ce Ju, Antoine Collas, Florent Bouchard, Bertrand Thirion

A six-dataset benchmark tests whether SPD-based resting-state fMRI connectome models for age prediction generalize to entirely unseen cohorts. Leave-one-dataset-out evaluation reveals a much larger performance drop than pooled cross-validation, with no single method consistently outperforming simpler correlation-vector and tangent-space baselines; SPDNet performs well in several settings but does not eliminate cohort-shift effects.

Key insights

  • Pooled cross-validation is substantially more optimistic than holding out an entire dataset; external performance is strongly affected by age-range overlap, clinical composition, and acquisition differences, not only by model choice.
  • SPDNet often achieves the best within-dataset or selected external results, but its advantage is inconsistent and does not establish universal superiority over CorrVec or tangent-space ridge regression.
  • Harmonization helps the linear SPD baselines more consistently than SPDNet, while increasing network depth or width does not reliably improve generalization under dataset shift.

Summary by alphaXiv.

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