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About this paper
Xuantuo Huang, Encheng Su, Aoran Wang, Pan Tan, Shengyong Xu, Yizhou Wang, Chen Tang, Shixiang Tang and 1 more
ADT encodes each protein residue as a discrete token carrying backbone and side-chain geometry, then uses a diffusion decoder to reconstruct atom-level coordinates. On held-out CASP14, its all-atom RMSD is 1.3157 Å, versus 3.4120 Å for DPLM-2 followed by cg2all without fixing the input backbone. This outperforms that pipeline, though atom-level methods achieve lower reconstruction error.
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